Differential gene usage in immune repertoires


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Documentation for package ‘IgGeneUsage’ version 1.12.0

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IgGeneUsage-package The R package IgGeneUsage
CDR3_Epitopes Net charge usage in CDR3 sequences of T-cell receptor repertoires disturbed by Influenza-A and CMV
DGU Differential immunoglobulin (Ig) gene usage in immune repertoires
d_zibb Simulated Ig gene usage data
Ig IGHV gene family usage in vaccine-challenged B-cell repertoires
IgGeneUsage The R package IgGeneUsage
IGHV_HCV IGHV gene usage in HCV+ and healthy individuals
Ig_SE IGHV gene family usage in vaccine-challenged B-cell repertoires (SummarizedExperiment object)
LOO Leave-one-out analysis for quantitative evaluation of the probability of DGU