msdata

DOI: 10.18129/B9.bioc.msdata    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: 3.15

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MassSpectrometryData
Version 0.36.0
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports
LinkingTo
Suggests xcms, mzR, MSnbase
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me IPO, MetaboAnnotation, MobilityTransformR, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, RforProteomics, Spectra, TargetDecoy, xcms
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msdata_0.36.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository git clone https://git.bioconductor.org/packages/msdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msdata
Package Short Url https://bioconductor.org/packages/msdata/
Package Downloads Report Download Stats

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