SNPlocs.Hsapiens.dbSNP151.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP151.GRCh38    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP151.GRCh38.

SNP locations for Homo sapiens (dbSNP Build 151)

Bioconductor version: 3.15

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 151. The source data files used for this package were created by NCBI between February 16-22, 2018, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP151.GRCh38")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP151.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.21
License Artistic-2.0
Depends BSgenome(>= 1.43.4)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP151.GRCh38_0.99.21.tar.gz
Windows Binary
macOS Binary (x86_64)
Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP151.GRCh38/
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