1 Introduction

The standR package is short for Spatial transcriptomics analyzes and decoding in R, it aims at providing good practice pipeline and useful functions for users to analyze Nanostring’s GeoMx DSP data, including data with GeoMX protein (~30-60 markers), CTA (cancer transcriptome atlas, ~1800 genes) and WTA (whole transcriptome atlas, ~18000 genes) panels.

The data analysis workflow consists of the following steps: