Changes in version 0.99.0 NEW FEATURES - Staged for Bioconductor submission. SIGNIFICANT USER-VISIBLE CHANGES - None. BUG FIXES - None. Changes in version 0.3.2 NEW FEATURES - Improved vignette SIGNIFICANT USER-VISIBLE CHANGES - None. BUG FIXES - None. Changes in version 0.3.1 NEW FEATURES - Compressed outputs. - Tests for proper handling of transitive merging. Overlaps that merge A -> B and B -> C, but not A -> C, will output A -> C and B -> C. That is, transitivity is applied and the final output will always use the distal most transcript in a chain as the final output. SIGNIFICANT USER-VISIBLE CHANGES - All export*() methods now include automatic detection of .gz filenames, which toggles the use of compressed (gzip) exports. BUG FIXES - None. Changes in version 0.3.0 NEW FEATURES - Merge table generation and exporting. SIGNIFICANT USER-VISIBLE CHANGES - Adds generateMergeTable() and exportMergeTable() for creating a merge table for transcripts that are not separated by a thresholded distance. Such files can be used by transcript quantification tools to specify what transcripts should be merged. BUG FIXES - None. Changes in version 0.2.2 NEW FEATURES - None. SIGNIFICANT USER-VISIBLE CHANGES - None. BUG FIXES - The BPPARAM was not being passed through to internal bplapply calls. Changes in version 0.2.1 NEW FEATURES - Added a NEWS.md file to track changes to the package. - Provide more control over parallel execution. SIGNIFICANT USER-VISIBLE CHANGES - The truncateTxome() method includes an optional BPPARAM with which users can pass a specific BiocParallelParam. If not provided, it will respect the result of BiocParallel::bpparam(), which can be globally set using BiocParallel::register(). BUG FIXES - None. Changes in version 0.2.0 NEW FEATURES - Adds deduplication behavior. Note that deduplication does not exclude transcripts from different genes. SIGNIFICANT USER-VISIBLE CHANGES - The truncateTxome() method now deduplicates transcripts spanning identical ranges after truncation. BUG FIXES - None.