CHANGES IN VERSION 1.3.0 ----------------------- NEW FEATURES o Improved error reporting from parallel jobs o Improved logging behavior o Added multiple input checks in the pipeline functions o Improved MLK behavior in Microsoft R o Added BED and BedGraph export o Added Manhattan plot function o Added ROC curve with AUC calculation o Made fragment size estimation functions public o Made PCA plotting functions public o Added rwDataClass for convenient data access. o Added getLocations, getMWAS*, getData* functions o Improved QQ-plot function (more parameters) o Speed up pvalue2qvalue function for sorted vectors o Added multithreading in ramwas0createArtificialData() o Improved testPhenotype() to have consistent input (variables by columns) o BAM scanning [ramwas1scanBams] rescans BAMs newer than the rbam files BUG FIXES o Use importMethodsFrom(filematrix, as.matrix) in NAMESPACE CHANGES IN VERSION 1.0.0 ----------------------- NEW FEATURES o Added joint methylation-genotype analysis BUG FIXES o package under active development