Changes in version 1.32 BUG FIXES o Fixed dependency changes for RSQLite 1.0.0 USER VISIBLE CHANGES o GenericArray is now available to accommodate oligo support for custom CDFs Changes in version 1.28 USER VISIBLE CHANGES o Changed dependency on RSQLite. Now, version >= 1.0.0 is required. o GenericArray is now available to support customized annotations. Changes in version 1.22 BUG FIXES o Removed dependency on RConverters.h (Prof Ripley) Changes in version 1.20 USER VISIBLE CHANGES o The annotation packages for Affymetrix Tiling arrays now contain strand information (suggestion and implementation: Kristof De Beuf) Changes in version 1.18 USER VISIBLE CHANGES o The annotation packages for SNP chips no longer have a 'fragment_length*' column in the featureSet/featureSetCNV tables. Fragment length now has its own table, 'fragmentLength' (for SNP probes) and 'fragmentLengthCNV' (for CN probes). o Rda files available through annotation packages created by pdInfoBuilder > 1.17 are compressed using 'xz'. o Fixed License field on the template. o Added an additional template for SNP arrays supported by CRLMM. Changes in version 1.15 USER VISIBLE CHANGES o Added support to Axiom chips: 'AffySNPPDInfoPkgSeed2' gets a new slot 'axiom', which takes TRUE or FALSE, depending on the specific array type. Changes in version 1.13 BUG FIXES o Added 'ZipData: no' to the template, which caused problems on Windows systems. Changes in version 1.11 USER VISIBLE CHANGES o For Gene and Exon arrays, all PM probes are in the pmfeature table (matching what happens with expression arrays) o Updated package template to require oligo (>= 1.11.18) BUG FIXES o Fixed creation of indices for Gene arrays