changes in version 1.5.3 (2022-02-28) + rename SpatialImage class to VirtualSpatialImage changes in version 1.5.2 (2022-01-09) + relocate and deprecate spatialData/Names changes in version 1.5.1 (2021-12-15) + improved coercion methods from SingleCellExperiment to SpatialExperiment + add new methods for image rotation/mirroring + add path argument to imgSource() + user flexibility whether to provide outs/ directory in read10xVisium() + documentation updates in show methods + additional documentation updates + update title and description in DESCRIPTION changes in version 1.3.2 (2021-07-27) + spatialData moved from colData to int_colData + restructuring of vignette and added imgData section changes in version 1.1.700 (2021-05-05) + updating roles in DESCRIPTION file + adding GeneExpression biocVie + switching LazyData to false + fixing return value in show method documentation changes in version 1.1.6 (2021-02-04) + removed additional slots in the SPE class definition (i.e. spatialData and spatialCoordsNames) + spatialCoords stored in int_colData() = numeric matrix + spatialDataNames stored in int_metadata() = character vector specifying a subset of colData() + the SPE show method does not include spatialData in colData; instead, spatialData/CoordNames are printed separately + the SPE constructor now allows specification of spatialData/Coords/-Names where -Names can be a subset of the supplied colData(); spatialData/Coords are thus optional + cbind() now allows duplicated sample_ids, which are made unique with a message + consistent usage of "spe" for SpatialExperiment objects across all examples (previously, both ve and se were used as well) + fixed cache/path-related error on windows in SpatialImage unit tests + added unit-tests of SpatialExperiment class validity + imgData field in int_metadata is now required to exist (but can be an empty DFrame) + colData<- protects sample_id & spatialDataNames fields; spatialData<- protects colData changes in version 1.1.5 (2021-31-03) + version bump to x.y.z format with .z increment + general code-style revision to keep to Bioc guidelines including, e.g. + usage of accessors (and not @) + keeping to a 80-character limit + spaces around logical operators (but not function arguments) + in-line { for function definitions, if-else statements etc. + re-ordering of roxygen2 documentation to be consistent across scripts changes in version 1.1.434 (2021-26-02) + fixing subset method according to SummarizedExperiment generic definition changes in version 1.1.432 (2021-15-02) + fixing documentation on latex errors changes in version 1.1.430-1.1.431 (2021-12-02) + adding BumpyMatrix as suggests + update documentation changes in version 1.1.429 (2021-12-02) + adding cd_keep = TRUE binds all the colData to the spatialData + fixing bug for cd_keep with multiple elements changes in version 1.1.428 (2021-12-02) + adding itemize to assays vignette item + correcting typo cd_keep->cd_bind in spatialData documentation changes in version 1.1.427 (2021-09-02) + fixing tenx vignette changes in version 1.1.426 (2021-09-02) + fixing read10xVisium example with data parameter changes in version 1.1.425 (2021-08-02) + restoring data parameter in read10xVisium + missing itemize in combine documentation changes in version 1.1.424 (2021-07-02) + cleaning documentation + removing spatialImage-methods.R file changes in version 1.1.423 (2021-02-02) + fixing documentation issues on imgData changes in version 1.1.422 (2021-29-01) + removing ve data because of local image problem (using example(read10xVisium) instead) changes in version 1.1.421 (2021-28-01) + fixing ve data local image problem changes in version 1.1.42 (2021-21-01) + implementing new SpatialExperiment class + spatialData slot + imgData and image handling methods (HLC) changes in version 0.99.4 (2020-24-07) + implementing bioconductor revisions first round changes in versionn 0.99.3 (2020-21-07) + implementing imagePaths in VisiumExperiment class + SpatialExperiment can now be created also without spatial coordinates changes in versionn 0.99.2 (2020-17-07) + adding version 0.99.2 changes in versionn 0.99.1 (2020-09-07) + adding version 0.99.1