Changes in version 0.99.10 (2020-04-14): o Formatted package for Bioconductor. Changes include: o Added runnable examples o Reformatted source code to match Bioconductor practices Changes in version 0.9.6: o Made the following significant changes o The vignette was updated by incorporating the illustration of the workflow to download the prior disease graph from the companion website (http://www.chunglab.io/ddnet). o plot(): Improve visualization, e.g., using a circle mode. Changes in version 0.9.5: o Made the following significant changes o GGPA(): Allow to incorporate a prior phenotype graph. o plot(): Use GGally (ggnet2) instead of Rgraphviz for the phenotype graph visualization. Changes in version 0.9.1: o The first version of GGPA R package.