tweeDEseq

DOI: 10.18129/B9.bioc.tweeDEseq    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 3.15

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

 

PDF R Script tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF   Reference Manual

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.42.0
In Bioconductor since BioC 2.9 (R-2.14) (11 years)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
LinkingTo
Suggests tweeDEseqCountData, xtable
SystemRequirements
Enhances
URL http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me ptmixed
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tweeDEseq_1.42.0.tar.gz
Windows Binary tweeDEseq_1.42.0.zip
macOS Binary (x86_64) tweeDEseq_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tweeDEseq
Package Short Url https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report Download Stats

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