metaMS

DOI: 10.18129/B9.bioc.metaMS    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see metaMS.

MS-based metabolomics annotation pipeline

Bioconductor version: 3.15

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut] (author of GC-MS part, Initial Maintainer), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline), Yann Guitton [ctb, cre] , Julien Saint-Vanne [ctb]

Maintainer: Yann Guitton <yann.guitton at gmail.com>

Citation (from within R, enter citation("metaMS")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaMS")

 

PDF R Script runGC
PDF R Script runLC
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.32.0
In Bioconductor since BioC 2.14 (R-3.1) (8.5 years)
License GPL (>= 2)
Depends R (>= 4.0), methods, CAMERA, xcms(>= 1.35)
Imports Matrix, tools, robustbase, BiocGenerics, graphics, stats, utils
LinkingTo
Suggests metaMSdata, RUnit
SystemRequirements
Enhances
URL https://github.com/yguitton/metaMS
Depends On Me
Imports Me
Suggests Me CluMSID
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaMS_1.32.0.tar.gz
Windows Binary metaMS_1.32.0.zip
macOS Binary (x86_64) metaMS_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metaMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaMS
Package Short Url https://bioconductor.org/packages/metaMS/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: