cnvScoreStouffer | Integrate CNV scores |
example.gbm.mae | Glioblastoma (GBM) Example Dataset |
gbm.pathways | Glioblastoma (GBM) Pathways |
gene.map | Gene Location Mapping |
makeSaturationPlots | Main function to generate the summary plots of the analysis |
mapEntrez | Convert from entrez ids to hugo gene names |
mapHugo | Convert from hugo gene names to entrez ids |
mapScoresCnvBand | Map scores to cytoband location |
Moma | MOMA Object |
Moma-class | MOMA Object |
MomaConstructor | MOMA Constructor Function |
mutSig | MutSig Blacklisted genes |
sampleNameFilter | Retain TCGA sample ids without the final letter designation ('A/B/C') |
stoufferIntegrate | dispatch method for either CNV location corrected or SNV |
stoufferIntegrateDiggit | Use Stouffer's method to combine z-scores of DIGGIT interactions for each cMR protein. |