GUIDE-seq and PEtag-seq analysis pipeline


[Up] [Top]

Documentation for package ‘GUIDEseq’ version 1.26.0

Help Pages

GUIDEseq-package Analysis of GUIDE-seq
annotateOffTargets Annotate offtargets with gene name
combineOfftargets Combine Offtargets
createBarcodeFasta Create barcode as fasta file format for building bowtie1 index
getPeaks Obtain peaks from GUIDE-seq
getUniqueCleavageEvents Using UMI sequence to obtain the starting sequence library
getUsedBarcodes Create barcodes from the p5 and p7 index used for each sequencing lane
GUIDEseq Analysis of GUIDE-seq
GUIDEseqAnalysis Analysis pipeline for GUIDE-seq dataset
mergePlusMinusPeaks Merge peaks from plus strand and minus strand
offTargetAnalysisOfPeakRegions Offtarget Analysis of GUIDE-seq peaks
peaks.gr example cleavage sites
PEtagAnalysis Analysis pipeline for PEtag-seq dataset
uniqueCleavageEvents example unique cleavage sites