DOI: 10.18129/B9.bioc.fCCAC    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see fCCAC.

functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Bioconductor version: 3.14

An application of functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets.

Author: Pedro Madrigal [aut, cre]

Maintainer: Pedro Madrigal <pmadrigal at ebi.ac.uk>

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biocViews ChIPSeq, Coverage, Epigenetics, FunctionalGenomics, Sequencing, Software, Transcription
Version 1.20.0
In Bioconductor since BioC 3.4 (R-3.3) (5.5 years)
License Artistic-2.0
Depends R (>= 3.3.0), S4Vectors, IRanges, GenomicRanges, grid
Imports fda, RColorBrewer, genomation, ggplot2, ComplexHeatmap, grDevices, stats, utils
Suggests RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
Depends On Me
Imports Me
Suggests Me
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Source Package fCCAC_1.20.0.tar.gz
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