SC3

DOI: 10.18129/B9.bioc.SC3    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see SC3.

Single-Cell Consensus Clustering

Bioconductor version: 3.14

A tool for unsupervised clustering and analysis of single cell RNA-Seq data.

Author: Vladimir Kiselev

Maintainer: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>

Citation (from within R, enter citation("SC3")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SC3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SC3")

 

HTML R Script SC3 package manual
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, ImmunoOncology, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization
Version 1.22.0
In Bioconductor since BioC 3.3 (R-3.3) (6 years)
License GPL-3
Depends R (>= 3.3)
Imports graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors
LinkingTo Rcpp, RcppArmadillo
Suggests knitr, rmarkdown, mclust, scater
SystemRequirements
Enhances
URL https://github.com/hemberg-lab/SC3
BugReports https://support.bioconductor.org/t/sc3/
Depends On Me
Imports Me FEAST
Suggests Me InteractiveComplexHeatmap, scTreeViz, VAExprs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SC3_1.22.0.tar.gz
Windows Binary SC3_1.22.0.zip
macOS 10.13 (High Sierra) SC3_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SC3
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SC3
Package Short Url https://bioconductor.org/packages/SC3/
Package Downloads Report Download Stats

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