ProtGenerics

DOI: 10.18129/B9.bioc.ProtGenerics    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ProtGenerics.

Generic infrastructure for Bioconductor mass spectrometry packages

Bioconductor version: 3.14

S4 generic functions and classes needed by Bioconductor proteomics packages.

Author: Laurent Gatto <laurent.gatto at uclouvain.be>, Johannes Rainer <johannes.rainer at eurac.edu>

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("ProtGenerics")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ProtGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, MassSpectrometry, Proteomics, Software
Version 1.26.0
In Bioconductor since BioC 3.1 (R-3.2) (7 years)
License Artistic-2.0
Depends methods
Imports
LinkingTo
Suggests testthat
SystemRequirements
Enhances
URL https://github.com/RforMassSpectrometry/ProtGenerics
Depends On Me Cardinal, MSnbase, Spectra, tofsims, topdownr
Imports Me ensembldb, matter, MsBackendMassbank, MsFeatures, MSGFplus, MSnID, mzID, mzR, QFeatures, xcms
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProtGenerics_1.26.0.tar.gz
Windows Binary ProtGenerics_1.26.0.zip
macOS 10.13 (High Sierra) ProtGenerics_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ProtGenerics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProtGenerics
Package Short Url https://bioconductor.org/packages/ProtGenerics/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: