DOI: 10.18129/B9.bioc.GNET2    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see GNET2.

Constructing gene regulatory networks from expression data through functional module inference

Bioconductor version: 3.14

Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.

Author: Chen Chen, Jie Hou and Jianlin Cheng

Maintainer: Chen Chen <ccm3x at>

Citation (from within R, enter citation("GNET2")):


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biocViews GeneExpression, Network, NetworkInference, Regression, Software
Version 1.10.0
In Bioconductor since BioC 3.9 (R-3.6) (3 years)
License Apache License 2.0
Depends R (>= 3.6)
Imports ggplot2, xgboost, Rcpp, reshape2, grid, DiagrammeR, methods, stats, matrixStats, graphics, SummarizedExperiment, dplyr, igraph, grDevices, utils
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Suggests knitr, rmarkdown
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