DOI: 10.18129/B9.bioc.GEOquery    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see GEOquery.

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: 3.14

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at>

Maintainer: Sean Davis <sdavis2 at>

Citation (from within R, enter citation("GEOquery")):


To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DataImport, Microarray, OneChannel, SAGE, Software, TwoChannel
Version 2.62.2
In Bioconductor since BioC 1.8 (R-2.3) (16 years)
License GPL-2
Depends methods, Biobase
Imports httr, readr (>= 1.3.1), xml2, dplyr, data.table, tidyr, magrittr, R.utils, limma
Suggests knitr, rmarkdown, BiocGenerics, testthat, covr, markdown
Depends On Me DrugVsDisease, dyebiasexamples, GEOmetadb, GSE103322, GSE13015, GSE62944, SCAN.UPC
Imports Me BeadArrayUseCases, bigmelon, BioPlex, ChIPXpress, coexnet, conclus, crossmeta, DExMA, EGAD, GAPGOM, GEOexplorer, GSE13015, MACPET, minfi, MoonlightR, phantasus, recount, SRAdb
Suggests Me airway, antiProfilesData, AUCell, autonomics, ctsGE, dearseq, debCAM, diffcoexp, dyebias, EpiDISH, fgsea, GCSscore, GeneExpressionSignature, GenomicOZone, methylclock, multiClust, MultiDataSet, muscData, omicsPrint, parathyroidSE, PCAtools, prostateCancerCamcap, prostateCancerGrasso, prostateCancerStockholm, prostateCancerTaylor, prostateCancerVarambally, quantiseqr, RegEnrich, RegParallel, RGSEA, Rnits, runibic, skewr, spatialHeatmap, TargetScore, zFPKM
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Source Package GEOquery_2.62.2.tar.gz
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macOS 10.13 (High Sierra) GEOquery_2.62.2.tgz
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