ptairData

DOI: 10.18129/B9.bioc.ptairData    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ptairData.

PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace

Bioconductor version: 3.13

The package ptairData contains two raw datasets from Proton-Transfer-Reaction Time-of-Flight mass spectrometer acquisitions (PTR-TOF-MS), in the HDF5 format. One from the exhaled air of two volunteer healthy individuals with three replicates, and one from the cell culture headspace from two mycobacteria species and one control (culture medium only) with two replicates. Those datasets are used in the examples and in the vignette of the ptairMS package (PTR-TOF-MS data pre-processing). There are also used to gererate the ptrSet in the ptairMS data : exhaledPtrset and mycobacteriaSet

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairData")

 

HTML	R Script	PTR-TOF-MS dataset
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellCulture, ExperimentData, MassSpectrometryData
Version	1.0.1
License	GPL-3
Depends
Imports	rhdf5, signal, stats, graphics
LinkingTo
Suggests	knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL
BugReports	https://github.com/camilleroquencourt/ptairData/issues
Depends On Me
Imports Me
Suggests Me	ptairMS
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ptairData_1.0.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/ptairData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ptairData
Package Short Url	https://bioconductor.org/packages/ptairData/
Package Downloads Report	Download Stats