COHCAPanno

DOI: 10.18129/B9.bioc.COHCAPanno    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see COHCAPanno.

Annotations for City of Hope CpG Island Analysis Pipeline

Bioconductor version: 3.13

Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms

Author: Charles Warden

Maintainer: Charles Warden <cwarden45 at gmail.com>

Citation (from within R, enter citation("COHCAPanno")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("COHCAPanno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COHCAPanno")

 

PDF R Script COHCAPanno Vignette
PDF   Reference Manual

Details

biocViews ArrayExpress, CpGIslandData, ExperimentData, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.28.0
License GPL-3
Depends R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me COHCAP
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package COHCAPanno_1.28.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/COHCAPanno
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/COHCAPanno
Package Short Url https://bioconductor.org/packages/COHCAPanno/
Package Downloads Report Download Stats

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