DOI: 10.18129/B9.bioc.waddR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see waddR.

Statistical tests for detecting differential distributions based on the 2-Wasserstein distance

Bioconductor version: 3.13

The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as well as a specifically tailored test for differential expression in single-cell RNA sequencing data.

Author: Roman Schefzik [aut], Julian Flesch [cre]

Maintainer: Julian Flesch <julianflesch at gmail.com>

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HTML R Script waddR
HTML R Script wasserstein_metric
HTML R Script wasserstein_singlecell
HTML R Script wasserstein_test
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biocViews DifferentialExpression, SingleCell, Software, StatisticalMethod
Version 1.6.1
In Bioconductor since BioC 3.10 (R-3.6) (2 years)
License MIT + file LICENSE
Depends R (>= 3.6.0)
Imports Rcpp (>= 1.0.1), arm (>= 1.10-1), eva, BiocFileCache, BiocParallel, SingleCellExperiment, parallel, methods, stats
LinkingTo Rcpp, RcppArmadillo
Suggests knitr, devtools, testthat, roxygen2, rprojroot, rmarkdown, scater
URL https://github.com/goncalves-lab/waddR.git
BugReports https://github.com/goncalves-lab/waddR/issues
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Source Package waddR_1.6.1.tar.gz
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