DOI: 10.18129/B9.bioc.uSORT    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see uSORT.

uSORT: A self-refining ordering pipeline for gene selection

Bioconductor version: 3.13

This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.

Author: Mai Chan Lau, Hao Chen, Jinmiao Chen

Maintainer: Hao Chen <chen_hao at>

Citation (from within R, enter citation("uSORT")):


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biocViews CellBiology, DNASeq, GUI, ImmunoOncology, RNASeq, Software
Version 1.18.0
In Bioconductor since BioC 3.4 (R-3.3) (5 years)
License Artistic-2.0
Depends R (>= 3.3.0), tcltk
Imports igraph, Matrix, RANN, RSpectra, VGAM, gplots, parallel, plyr, methods, cluster, Biobase, fpc, BiocGenerics, monocle, grDevices, graphics, stats, utils
Suggests knitr, RUnit, testthat, ggplot2
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