DOI: 10.18129/B9.bioc.rnaSeqMap    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: 3.13

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("rnaSeqMap")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews Annotation, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version 2.50.0
In Bioconductor since BioC 2.7 (R-2.12) (11 years)
License GPL-2
Depends R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports GenomicRanges, IRanges, edgeR, DESeq, DBI
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