bigPint

DOI: 10.18129/B9.bioc.bigPint    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see bigPint.

Big multivariate data plotted interactively

Bioconductor version: 3.13

Methods for visualizing large multivariate datasets using static and interactive scatterplot matrices, parallel coordinate plots, volcano plots, and litre plots. Includes examples for visualizing RNA-sequencing datasets and differentially expressed genes.

Author: Lindsay Rutter [aut, cre], Dianne Cook [aut]

Maintainer: Lindsay Rutter <lindsayannerutter at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bigPint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bigPint")

 

HTML	R Script	bigPint Vignette
HTML	R Script	Data metrics object
HTML	R Script	Recommended RNA-seq pipeline
PDF		Reference Manual

Details

biocViews	Clustering, DataImport, DifferentialExpression, GeneExpression, MultipleComparison, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 3.6.0)
Imports	DelayedArray(>= 0.12.2), dplyr (>= 0.7.2), GGally (>= 1.3.2), ggplot2 (>= 2.2.1), graphics (>= 3.5.0), grDevices (>= 3.5.0), grid (>= 3.5.0), gridExtra (>= 2.3), hexbin (>= 1.27.1), Hmisc (>= 4.0.3), htmlwidgets (>= 0.9), methods (>= 3.5.2), plotly (>= 4.7.1), plyr (>= 1.8.4), RColorBrewer (>= 1.1.2), reshape (>= 0.8.7), shiny (>= 1.0.5), shinycssloaders (>= 0.2.0), shinydashboard (>= 0.6.1), stats (>= 3.5.0), stringr (>= 1.3.1), SummarizedExperiment(>= 1.16.1), tidyr (>= 0.7.0), utils (>= 3.5.0)
LinkingTo
Suggests	BiocGenerics(>= 0.29.1), data.table (>= 1.11.8), EDASeq(>= 2.14.0), edgeR(>= 3.22.2), gtools (>= 3.5.0), knitr (>= 1.13), matrixStats (>= 0.53.1), rmarkdown (>= 1.10), roxygen2 (>= 3.0.0), RUnit (>= 0.4.32), tibble (>= 1.4.2)
SystemRequirements
Enhances
URL	https://github.com/lindsayrutter/bigPint
BugReports	https://github.com/lindsayrutter/bigPint/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bigPint_1.8.0.tar.gz
Windows Binary	bigPint_1.8.0.zip
macOS 10.13 (High Sierra)	bigPint_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bigPint
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bigPint
Package Short Url	https://bioconductor.org/packages/bigPint/
Package Downloads Report	Download Stats