DOI: 10.18129/B9.bioc.SAGx    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SAGx.

Statistical Analysis of the GeneChip

Bioconductor version: 3.13

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg, <pi.broberg at>

Citation (from within R, enter citation("SAGx")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Clustering, DataImport, DifferentialExpression, GeneExpression, GeneSetEnrichment, KEGG, Microarray, MultipleComparison, OneChannel, Pathways, Preprocessing, Regression, Software
Version 1.66.0
In Bioconductor since BioC 1.9 (R-2.4) (15 years)
License GPL-3
Depends R (>= 2.5.0), stats, multtest, methods
Imports Biobase, stats4
Suggests KEGG.db, hu6800.db, MASS
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