DOI: 10.18129/B9.bioc.RchyOptimyx    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RchyOptimyx.

Optimyzed Cellular Hierarchies for Flow Cytometry

Bioconductor version: 3.13

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Author: Adrin Jalali, Nima Aghaeepour

Maintainer: Adrin Jalali <adrin.jalali at gmail.com>, Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("RchyOptimyx")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews FlowCytometry, Software
Version 2.32.0
In Bioconductor since BioC 2.10 (R-2.15) (9.5 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports Rgraphviz, sfsmisc, graphics, methods, graph, grDevices, flowType (>= 2.0.0)
Suggests flowCore
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RchyOptimyx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RchyOptimyx
Package Short Url https://bioconductor.org/packages/RchyOptimyx/
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