DOI: 10.18129/B9.bioc.MicrobiotaProcess    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MicrobiotaProcess.

an R package for analysis, visualization and biomarker discovery of microbiome

Bioconductor version: 3.13

MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It introduces MPSE class, this make it more interoperable with the existing computing ecosystem. Moreover, it introduces a tidy microbiome data structure paradigm and analysis grammar. It provides a wide variety of microbiome analsys procedures under the unified and common framework (tidy-like framework).

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

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HTML R Script Introduction to MicrobiotaProcess
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biocViews FeatureExtraction, Microbiome, MultipleComparison, Software, Visualization
Version 1.4.4
In Bioconductor since BioC 3.11 (R-4.0) (1.5 years)
License GPL (>= 3.0)
Depends R (>= 4.0.0)
Imports ape, tidyr, ggplot2, magrittr, dplyr, Biostrings, ggrepel, vegan, zoo, ggtree, tidytree (>= 0.3.5), MASS, methods, rlang, tibble, grDevices, stats, utils, coin, ggsignif, patchwork, ggstar, tidyselect, SummarizedExperiment, foreach, treeio
Suggests rmarkdown, prettydoc, testthat, knitr, nlme, phangorn, picante, plyr, DECIPHER, randomForest, biomformat, scales, yaml, withr, S4Vectors, purrr, seqmagick, glue, corrr, ggupset, ggVennDiagram, gghalves, ggalluvial, forcats, pillar, cli, phyloseq, aplot, ggnewscale, ggside, ggtreeExtra
URL https://github.com/YuLab-SMU/MicrobiotaProcess/
BugReports https://github.com/YuLab-SMU/MicrobiotaProcess/issues
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Source Package MicrobiotaProcess_1.4.4.tar.gz
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