MEDME

DOI: 10.18129/B9.bioc.MEDME    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MEDME.

Modelling Experimental Data from MeDIP Enrichment

Bioconductor version: 3.13

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments

Author: Mattia Pelizzola and Annette Molinaro

Maintainer: Mattia Pelizzola <mattia.pelizzola at gmail.com>

Citation (from within R, enter citation("MEDME")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MEDME")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEDME")

 

PDF R Script MEDME.pdf
PDF   Reference Manual

Details

biocViews CpGIsland, DNAMethylation, Microarray, Software
Version 1.52.0
In Bioconductor since BioC 2.3 (R-2.8) (13 years)
License GPL (>= 2)
Depends R (>= 2.15), grDevices, graphics, methods, stats, utils
Imports Biostrings, MASS, drc
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg18, BSgenome.Mmusculus.UCSC.mm9
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MEDME_1.52.0.tar.gz
Windows Binary MEDME_1.52.0.zip
macOS 10.13 (High Sierra) MEDME_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MEDME
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MEDME
Package Short Url https://bioconductor.org/packages/MEDME/
Package Downloads Report Download Stats

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