DOI: 10.18129/B9.bioc.GeomxTools    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see GeomxTools.

NanoString GeoMx Tools

Bioconductor version: 3.13

Tools for NanoString Technologies GeoMx Technology. Package provides functions for reading in DCC and PKC files based on an ExpressionSet derived object. Normalization and QC functions are also included.

Author: Nicole Ortogero [cre, aut], Zhi Yang [aut]

Maintainer: Nicole Ortogero <nortogero at>

Citation (from within R, enter citation("GeomxTools")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Introduction to the NanoStringGeomxSet Class
PDF   Reference Manual


biocViews CellBasedAssays, DataImport, ExperimentalDesign, GeneExpression, Normalization, ProprietaryPlatforms, Proteomics, RNASeq, Sequencing, Software, Transcription, Transcriptomics, mRNAMicroarray
Version 1.0.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License Artistic-2.0
Depends R (>= 3.6), NanoStringNCTools
Imports Biobase, S4Vectors, rjson, readxl, EnvStats, reshape2, methods, utils, stats, BiocGenerics
Suggests knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package GeomxTools_1.0.0.tar.gz
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macOS 10.13 (High Sierra) GeomxTools_1.0.0.tgz
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