BiocWorkflowTools

DOI: 10.18129/B9.bioc.BiocWorkflowTools    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BiocWorkflowTools.

Tools to aid the development of Bioconductor Workflow packages

Bioconductor version: 3.13

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej OleÅ› [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("BiocWorkflowTools")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")

 

HTML R Script Converting Rmarkdown to F1000Research LaTeX Format
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ReportWriting, Software
Version 1.18.0
In Bioconductor since BioC 3.4 (R-3.3) (5 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me RNAseq123
Imports Me
Suggests Me BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocWorkflowTools_1.18.0.tar.gz
Windows Binary BiocWorkflowTools_1.18.0.zip
macOS 10.13 (High Sierra) BiocWorkflowTools_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocWorkflowTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocWorkflowTools
Package Short Url https://bioconductor.org/packages/BiocWorkflowTools/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: