DOI: 10.18129/B9.bioc.AffyExpress    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AffyExpress.

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: 3.13

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at>, Xuejun Arthur Li <xueli at>

Maintainer: Xuejun Arthur Li <xueli at>

Citation (from within R, enter citation("AffyExpress")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version 1.58.0
In Bioconductor since BioC 2.1 (R-2.6) (14 years)
License LGPL
Depends R (>= 2.10), affy(>= 1.23.4), limma
Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
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