SangerContig-class-updateQualityParam {sangeranalyseR} | R Documentation |
A SangerContig method which updates QualityReport parameter for each the SangerRead instance inside SangerContig.
## S4 method for signature 'SangerContig' updateQualityParam(object, TrimmingMethod = "M1", M1TrimmingCutoff = 1e-04, M2CutoffQualityScore = NULL, M2SlidingWindowSize = NULL, processorsNum = NULL)
object |
A SangerContig S4 instance. |
TrimmingMethod |
The read trimming method for this SangerRead. The value must be |
M1TrimmingCutoff |
The trimming cutoff for the Method 1. If |
M2CutoffQualityScore |
The trimming cutoff quality score for the Method 2. If |
M2SlidingWindowSize |
The trimming sliding window size for the Method 2. If |
processorsNum |
The number of processors to use, or NULL (the default) for all available processors. |
A SangerContig instance.
data("sangerContigData") ## Not run: updateQualityParam(sangerContigData, TrimmingMethod = "M2", M1TrimmingCutoff = NULL, M2CutoffQualityScore = 40, M2SlidingWindowSize = 15) ## End(Not run)