writeFastaSC {sangeranalyseR} | R Documentation |
Method writeFastaSC
Description
Method writeFastaSC
Usage
writeFastaSC(object, outputDir = NULL, compress = FALSE,
compression_level = NA, selection = "all")
Arguments
object |
A SangerContig S4 instance.
|
outputDir |
The output directory of generated FASTA files.
|
compress |
Like for the save function in base R, must be TRUE or FALSE (the default), or a single string specifying whether writing to the file is to use compression. The only type of compression supported at the moment is "gzip". This parameter will be passed to writeXStringSet function in Biostrings package.
|
compression_level |
This parameter will be passed to writeXStringSet function in Biostrings package.
|
selection |
This value can be all , reads_alignment , reads_unalignment or contig . It generates reads and the contig FASTA files.
|
Value
The output directory of FASTA files.
Examples
data(sangerContigData)
writeFastaSC(sangerContigData)
[Package
sangeranalyseR version 1.2.0
Index]