SangerContig-class-generateReportSC {sangeranalyseR} | R Documentation |
A SangerContig method which generates final reports of the SangerContig instance.
## S4 method for signature 'SangerContig' generateReportSC(object, outputDir, includeSangerRead = TRUE, navigationAlignmentFN = NULL)
object |
A SangerContig S4 instance. |
outputDir |
The output directory of the generated HTML report. |
includeSangerRead |
The parameter that decides whether to include SangerRead level report. The value is |
navigationAlignmentFN |
The internal parameter passed to HTML report. Users should not modify this parameter on their own. |
The output absolute path to the SangerContig's HTML file.
data("sangerContigData") ## Not run: generateReportSC(sangerContigData) ## End(Not run)