ssPATHS: Single Sample PATHway Score

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Documentation for package ‘ssPATHS’ version 1.6.0

Help Pages

expected_score_output Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
gene_weights_reference Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
get_classification_accuracy Get Classification Accuracy
get_gene_weights Get Gene Weights from Reference Data
get_hypoxia_genes Get Ensembl ids of hypoxia related genes.
get_new_samp_score Get a pathway score for an unseen sample
new_samp_df Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
tcga_expr_df Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia