spatialHeatmap


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Documentation for package ‘spatialHeatmap’ version 1.2.0

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spatialHeatmap-package spatialHeatmap Spatial Heatmap, Matrix Heatmap, Network
adj_mod Compute Adjacency Matrix and Identify Modules
aggr_rep Aggregate "Sample__Condition" Replicates in Data Matrix
com_factor Combine Factors in Targets File
custom_shiny Create Customized Shiny App of Spaital Heatmap
edit_tar Edit Targets Files
filter_data Filter the Data Matrix
matrix_hm Matrix Heatmap
network Visualize a Target Assayed Item in a Network Graph
norm_data Normalize Sequencing Count Matrix
read_cache Read R Objects from Cache
read_fr Import Data from Tabular Files
read_hdf5 Read Data from the Shiny App Database
return_feature Return aSVG Files Relevant to Target Features
save_cache Save R Objects in Cache
shiny_all Integrated Shiny App
shiny_shm Integrated Shiny App
spatialHeatmap spatialHeatmap Spatial Heatmap, Matrix Heatmap, Network
spatial_hm Create Spatial Heatmaps
submatrix Subset Target Assayed Items and Their Nearest Neighbors
update_feature Update aSVG Spatial Features
write_hdf5 Construct Database for the Shiny App