Empirical Bayesian approach to mutational signature discovery

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Documentation for package ‘signeR’ version 1.18.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

signeR-package	Empirical Bayesian approach to mutational signature discovery
Average_exp	SignExp class methods
Average_exp-method	SignExp class methods
Average_sign	SignExp class methods
Average_sign-method	SignExp class methods
BICboxplot	signeR plot functions
Classify	Classify unknown samples
Classify-method	Classify unknown samples
DiffExp	Differential Exposure Analysis
DiffExp-method	Differential Exposure Analysis
ExposureBarplot	signeR plot functions
ExposureBarplot-method	signeR plot functions
ExposureBoxplot	signeR plot functions
ExposureBoxplot-method	signeR plot functions
ExposureHeat	signeR plot functions
ExposureHeat-method	signeR plot functions
genCountMatrixFromVcf	count matrix and opportinity matrix generators
genOpportunityFromGenome	count matrix and opportinity matrix generators
Median_exp	SignExp class methods
Median_exp-method	SignExp class methods
Median_sign	SignExp class methods
Median_sign-method	SignExp class methods
Normalize	SignExp class methods
Normalize-method	SignExp class methods
Paths	signeR plot functions
Paths-method	signeR plot functions
Reorder_mutations	SignExp class methods
Reorder_mutations-method	SignExp class methods
Reorder_samples	SignExp class methods
Reorder_samples-method	SignExp class methods
Reorder_signatures	SignExp class methods
Reorder_signatures-method	SignExp class methods
setMutations	SignExp class methods
setMutations-method	SignExp class methods
setSamples	SignExp class methods
setSamples-method	SignExp class methods
signeR	signeR
SignExp	SignExp class
SignExp-class	SignExp class
SignHeat	signeR plot functions
SignHeat-method	signeR plot functions
SignPlot	signeR plot functions
SignPlot-method	signeR plot functions