Mass Spectrometry-Based Single-Cell Proteomics Data Analysis


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Documentation for package ‘scp’ version 1.2.0

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aggregateFeaturesOverAssays Aggregate features over multiple assays
computeMedianCV_SCoPE2 (Deprecated) Compute the median coefficient of variation (CV) per cell
computeSCR Compute the sample over carrier ratio (SCR)
divideByReference Divide assay columns by a reference column
medianCVperCell Compute the median coefficient of variation (CV) per cell
mqScpData Example MaxQuant/SCoPE2 output
normalizeSCP Normalize single-cell proteomics (SCP) data
pep2qvalue Compute q-values
readSCP Read single-cell proteomics data as a QFeatures object from tabular data and metadata
readSingleCellExperiment Read SingleCellExperiment from tabular data
rowDataToDF Extract the 'rowData' of a 'QFeatures' object to a 'DataFrame'
sampleAnnotation Single cell sample annotation
scp1 Single Cell QFeatures data