In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data


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Documentation for package ‘scds’ version 1.8.0

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bcds Find doublets/multiplets in UMI scRNA-seq data;
cxds Find doublets/multiplets in UMI scRNA-seq data;
cxds_bcds_hybrid Find doublets/multiples in UMI scRNA-seq data;
cxds_getTopPairs Extract top-scoring gene pairs from an SingleCellExperiment where cxds has been run
get_dblCalls_ALL Wrapper for getting doublet calls
get_dblCalls_dist Derive doublet calls from doublset scores
get_dblCalls_ROC Derive doublet calls from classification probabilities
sce_chcl Example single cell experiment ('SingleCellExperiment') object