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| artImpute | Artificially miss and impute each data entry individually by ignoring outlying values |
| clusterData | Hierarchical cluster analysis |
| dropMarkers | Filter out markers |
| dysReg | Analyze dysregulated (protruding) events |
| markOut | Display outlying expressions |
| oppti | Outlier protein and phosphosite target identification |
| outScores | Analyze putative outliers |
| plotDen | Draw densities |
| rankPerOut | Rank markers by the percentage of outlying events |
| statTest | Analyze dysregulation significance |