Normalization and difference calling in ChIP-seq data

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Documentation for package ‘normr’ version 1.18.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

normR-package	Enrichment, Difference and Regime Calling in ChIP-seq data.
BamsignalsConfig	Container for configuration of read counting with bamsignals in normR
BamsignalsCountConfig	Container for configuration of read counting with bamsignals in normR
configPairedEnd	Container for configuration of read counting with bamsignals in normR
configSingleEnd	Container for configuration of read counting with bamsignals in normR
countConfigPairedEnd	Container for configuration of read counting with bamsignals in normR
countConfigPairedEnd-method	Container for configuration of read counting with bamsignals in normR
countConfigSingleEnd	Container for configuration of read counting with bamsignals in normR
countConfigSingleEnd-method	Container for configuration of read counting with bamsignals in normR
differenceCall	Difference Calling between conditional ChIP-seq data in normR with diffR
DifferenceCalling	Difference Calling between conditional ChIP-seq data in normR with diffR
DifferentialPeakCalling	Enrichment, Difference and Regime Calling in ChIP-seq data.
diffR	Difference Calling between conditional ChIP-seq data in normR with diffR
diffr	Difference Calling between conditional ChIP-seq data in normR with diffR
diffR-generic	Difference Calling between conditional ChIP-seq data in normR with diffR
diffR-method	Difference Calling between conditional ChIP-seq data in normR with diffR
enrichmentCall	Enrichment Calling on ChIP-seq data in normR with enrichR
EnrichmentCalling	Enrichment Calling on ChIP-seq data in normR with enrichR
enrichR	Enrichment Calling on ChIP-seq data in normR with enrichR
enrichr	Enrichment Calling on ChIP-seq data in normR with enrichR
enrichR-generic	Enrichment Calling on ChIP-seq data in normR with enrichR
enrichR-method	Enrichment Calling on ChIP-seq data in normR with enrichR
exportR	Container for a fit done with normR
exportR-method	Container for a fit done with normR
getBamsignalsFilter	Container for configuration of read counting with bamsignals in normR
getClasses	Container for a fit done with normR
getClasses-method	Container for a fit done with normR
getCounts	Container for a fit done with normR
getCounts-method	Container for a fit done with normR
getEnrichment	Container for a fit done with normR
getEnrichment-method	Container for a fit done with normR
getFilter	Container for configuration of read counting with bamsignals in normR
getFilter-method	Container for configuration of read counting with bamsignals in normR
getNormRCountConfigFilter	Container for configuration of read counting with bamsignals in normR
getPosteriors	Container for a fit done with normR
getPosteriors-method	Container for a fit done with normR
getPvalues	Container for a fit done with normR
getPvalues-method	Container for a fit done with normR
getQvalues	Container for a fit done with normR
getQvalues-method	Container for a fit done with normR
getRanges	Container for a fit done with normR
getRanges-method	Container for a fit done with normR
length-method	Container for a fit done with normR
normR	Enrichment, Difference and Regime Calling in ChIP-seq data.
normr	Enrichment, Difference and Regime Calling in ChIP-seq data.
NormRCountConfig	Container for configuration of read counting with bamsignals in normR
NormRCountConfig-class	Container for configuration of read counting with bamsignals in normR
NormRFit	Container for a fit done with normR
NormRfit	Container for a fit done with normR
normRFit	Container for a fit done with normR
normrfit	Container for a fit done with normR
NormRFit-class	Container for a fit done with normR
PeakCalling	Enrichment, Difference and Regime Calling in ChIP-seq data.
plot-method	Container for a fit done with normR
plot.NormRFit	Container for a fit done with normR
print-method	Container for configuration of read counting with bamsignals in normR
print-method	Container for a fit done with normR
regimeCall	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
RegimeCalling	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
regimeR	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
regimer	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
regimeR-generic	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
regimeR-method	Regime Enrichment Calling for ChIP-seq data in normR with regimeR
show-method	Container for configuration of read counting with bamsignals in normR
show-method	Container for a fit done with normR
summary-method	Container for a fit done with normR