Multi-sample multi-group scRNA-seq data analysis tools

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Documentation for package ‘muscat’ version 1.6.0

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.mm_dream DS analysis using mixed-models (MM)
.mm_dream2 DS analysis using mixed-models (MM)
.mm_glmm DS analysis using mixed-models (MM)
.mm_vst DS analysis using mixed-models (MM)
aggregateData Aggregation of single-cell to pseudobulk data
calcExprFreqs calcExprFreqs
data Example datasets
example_sce Example datasets
mmDS DS analysis using mixed-models (MM)
pbDS pseudobulk DS analysis
pbFlatten pbFlatten Flatten pseudobulk SCE
pbHeatmap Heatmap of cluster-sample pseudobulks
pbMDS Pseudobulk-level MDS plot
prepSCE Prepare SCE for DS analysis
prepSim SCE preparation for 'simData'
resDS resDS Formatting of DS analysis results
simData simData