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| calculateMultiUMAP | Multi-modal UMAP |
| calculateMultiUMAP-method | Multi-modal UMAP |
| computeCorrelations | Compute correlations between modes |
| computeCorrelations-method | Compute correlations between modes |
| findTopCorrelations | Find top correlations between features |
| findTopCorrelations-method | Find top correlations between features |
| intersectClusters | Intersect pre-defined clusters |
| intersectGraphs | Intersect two graphs |
| multiModalMNN | Multi-modal batch correction with MNNs |
| rescaleByNeighbors | Rescale matrices for different modes |
| rescaleByNeighbors-method | Rescale matrices for different modes |
| runMultiUMAP | Multi-modal UMAP |