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| meshr-package | Enrichment analysis for MeSH terms. |
| annotation-method | Class "MeSHHyperGParams" |
| annotation<--method | Class "MeSHHyperGParams" |
| category | A function to return the name of MeSH category |
| category-method | A function to return the name of MeSH category |
| category<- | A function to return the name of MeSH category |
| category<--method | A function to return the name of MeSH category |
| database | A function to return the name of MeSH database |
| database-method | A function to return the name of MeSH database |
| database<- | A function to return the name of MeSH database |
| database<--method | A function to return the name of MeSH database |
| geneid.cummeRbund | Test data of significant differentially expressed genes used in cummeRbund package. |
| geneIds-method | Class "MeSHHyperGParams" |
| geneIds<--method | Class "MeSHHyperGParams" |
| generic,category | A function to return the name of MeSH category |
| generic,database | A function to return the name of MeSH database |
| initialize-method | Class "MeSHHyperGParams" |
| makeValidParams-method | Class "MeSHHyperGParams" |
| meshAnnotation | Class "MeSHHyperGResult" |
| meshAnnotation-method | Class "MeSHHyperGResult" |
| meshCategory | Class "MeSHHyperGResult" |
| meshCategory-method | Class "MeSHHyperGResult" |
| meshDatabase | Class "MeSHHyperGResult" |
| meshDatabase-method | Class "MeSHHyperGResult" |
| MeSHHyperGParams-class | Class "MeSHHyperGParams" |
| MeSHHyperGResult-class | Class "MeSHHyperGResult" |
| meshHyperGTest | Hypergeometric Tests for MeSH term association |
| meshHyperGTest-method | Hypergeometric Tests for MeSH term association |
| meshIds | Class "MeSHHyperGResult" |
| meshIds-method | Class "MeSHHyperGResult" |
| meshr | Enrichment analysis for MeSH terms. |
| meshTerms | Class "MeSHHyperGResult" |
| meshTerms-method | Class "MeSHHyperGResult" |
| pAdjust | Class "MeSHHyperGParams" |
| pAdjust-method | Class "MeSHHyperGParams" |
| pAdjust<- | Class "MeSHHyperGParams" |
| pAdjust<--method | Class "MeSHHyperGParams" |
| PMCID | PUBMEDID - PMCID correspondence |
| pvalueCutoff-method | Class "MeSHHyperGParams" |
| pvalueCutoff<--method | Class "MeSHHyperGParams" |
| pvalues | Class "MeSHHyperGResult" |
| pvalues-method | Class "MeSHHyperGResult" |
| save.pdf | Class "MeSHHyperGResult" |
| save.pdf-method | Class "MeSHHyperGResult" |
| show | Class "MeSHHyperGResult" |
| show-method | Class "MeSHHyperGResult" |
| sig.geneid.cummeRbund | Test data of significant differentially expressed genes used in cummeRbund package. |
| summary | Class "MeSHHyperGResult" |
| summary-method | Class "MeSHHyperGResult" |
| universeGeneIds | Class "MeSHHyperGParams" |
| universeGeneIds-method | Class "MeSHHyperGParams" |
| universeGeneIds<- | Class "MeSHHyperGParams" |
| universeGeneIds<--method | Class "MeSHHyperGParams" |