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| ldblock-package | c("\Sexpr[results=rd,stage=build]tools:::Rd_package_title(\"#1\")", "ldblock")data structures for linkage disequilibrium measures in populations |
| downloadPopByChr | download hapmap resource with LD estimates |
| EUR_singletons | singletons from EUR |
| expandSnpSet | Given a set of SNP identifiers, use LD to expand the set to include linked loci |
| hmld | import hapmap LD data and create a structure for its management; generates a sparse matrix representation of pairwise LD statistics and binds metadata on variant name and position |
| ldblock | c("\Sexpr[results=rd,stage=build]tools:::Rd_package_title(\"#1\")", "ldblock")data structures for linkage disequilibrium measures in populations |
| ldByGene | Obtain LD statistics in region specified by a gene model. |
| ldmat | use LDmat API from NCI LDlink service |
| ldmat-method | accessor for matrix component |
| ldstruct-class | Class '"ldstruct"' |
| s3_1kg | Create a URL referencing 1000 genomes content in AWS S3. |
| sampinf_1kg | population and relationship information for 1000 genomes |
| stack1kg | couple together a group of VCFs |