Interaction Based Homogeneity for Evaluating Gene Lists


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Documentation for package ‘ibh’ version 1.40.0

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ibh-package Interaction Based Homogeneity
findEntry Find the index of an entry in an interaction list
ibh Calculate interaction based homogeneity for the given gene list according to the interaction list
ibhBioGRID Calculate interaction based homogeneity for a gene list according to the BioGRID Interactions
ibhClusterEval Evaluate clustering with interaction based homogeneity
ibhClusterEvalBioGRID Evaluate clustering with interaction based homogeneity using BioGRID Interactions
ibhForMultipleGeneLists Calculate interaction based homogeneity for multiple gene lists according to the interaction list
ibhForMultipleGeneListsBioGRID Calculate interaction based homogeneity for multiple gene lists according to the BioGRID Interactions
readDirectedInteractionsFromCsv Read directed interactions from csv and create the interaction list
readUndirectedInteractionsFromCsv Read undirected interactions from csv and create the interaction list