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| barcode_binary_heatmap | Barcode Binary Heatmap |
| barcode_ggheatmap | barcode_ggheatmap |
| barcode_ggheatmap_stat | Barcode Top Clone Heatmap |
| barcode_stat_test | Barcode Statistical Test |
| bias_histogram | Bias histogram |
| bias_lineplot | Bias line plot |
| bias_ridge_plot | Bias Ridge plot |
| build_index_html | Build html |
| chord_diagram | Barcode Chord Diagram |
| clonal_contribution | Clonal contribution plot |
| clonal_count | Clonal count plot |
| clonal_diversity | Clonal diversity plot |
| cor_plot | Correlation Plot |
| create_SE | create_SE |
| dist_plot | Pairwise Distance Plot |
| estimate_barcode_threshold | Estimate Barcode Threshold |
| get_top_clones | get_top_clones (helper function) |
| launchApp | Launch Barcode App |
| mds_plot | MDS Plot |
| rank_abundance_plot | Rank Abundance Plot |
| rank_abundance_stat_test | Rank Abundance Statistical Test |
| scatter_plot | Scatter Plot |
| stat_hist | Stat histogram |
| subset_SE | subset_SE |
| threshold | Threshold |
| threshold_SE | Threshold SE |
| wu_subset | Small subset of Wu barcoding dataset |