TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information


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Documentation for package ‘TargetScore’ version 1.30.0

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TargetScore-package TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
bsxfun.se bsxfun with single expansion (real Matlab style) (Internal function)
dot.ext Elementwise dot product (modified dot function) (Internal function)
getTargetScores Compute targetScore of an overexpressed human microRNA
initialization Initialization of latent variable assignments (responsibility) of the VB-GMM (Internal function)
logmvgamma Logarithmic multivariate Gamma function (Internal function)
logsumexp Compute log(sum(exp(x),dim)) while avoiding numerical underflow (Internal function)
sort_components Sort mixture components in increasing order of averaged means (Internal function)
TargetScore TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
targetScore Probabilistic score of genes being the targets of an overexpressed microRNA
vbgmm Variational Bayesian Gaussian mixture model (VB-GMM)
vbound Variational Lower Bound Evaluation
vexp Variational-Expectation in VB-EM (Internal function)
vmax Variational-Maximimization in VB-EM (Internal function)