TargetScore-package |
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information |
bsxfun.se |
bsxfun with single expansion (real Matlab style) (Internal function) |
dot.ext |
Elementwise dot product (modified dot function) (Internal function) |
getTargetScores |
Compute targetScore of an overexpressed human microRNA |
initialization |
Initialization of latent variable assignments (responsibility) of the VB-GMM (Internal function) |
logmvgamma |
Logarithmic multivariate Gamma function (Internal function) |
logsumexp |
Compute log(sum(exp(x),dim)) while avoiding numerical underflow (Internal function) |
sort_components |
Sort mixture components in increasing order of averaged means (Internal function) |
TargetScore |
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information |
targetScore |
Probabilistic score of genes being the targets of an overexpressed microRNA |
vbgmm |
Variational Bayesian Gaussian mixture model (VB-GMM) |
vbound |
Variational Lower Bound Evaluation |
vexp |
Variational-Expectation in VB-EM (Internal function) |
vmax |
Variational-Maximimization in VB-EM (Internal function) |