S4 Class for Spatial Experiments handling

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Documentation for package ‘SpatialExperiment’ version 1.2.1

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addImg Methods for handling image-related data
addImg-method Methods for handling image-related data
cbind-method Combining SpatialExperiment objects
coerce-method The SpatialImage class
colData SpatialExperiment colData
colData<- SpatialExperiment colData
colData<--method SpatialExperiment colData
dim-method The SpatialImage class
getImg Methods for handling image-related data
getImg-method Methods for handling image-related data
imgData Methods for spatial attributes
imgData-method Methods for spatial attributes
imgData-methods Methods for handling image-related data
imgData<- Methods for spatial attributes
imgData<--method Methods for spatial attributes
imgRaster The SpatialImage class
imgRaster-method The SpatialImage class
imgRaster-method Methods for handling image-related data
imgRaster<- The SpatialImage class
imgRaster<--method The SpatialImage class
imgSource The SpatialImage class
imgSource-method The SpatialImage class
imgSource-method Methods for handling image-related data
imgSource<- The SpatialImage class
imgSource<--method The SpatialImage class
LoadedSpatialImage-class The SpatialImage class
molecules Methods for named assays
molecules-method Methods for named assays
molecules<- Methods for named assays
molecules<--method Methods for named assays
read10xVisium Load data from a 10x Genomics Visium experiment
readImgData Read images & scale factors for 10x Genomics Visium
RemoteSpatialImage-class The SpatialImage class
rmvImg Methods for handling image-related data
rmvImg-method Methods for handling image-related data
scaleFactors Methods for spatial attributes
scaleFactors-method Methods for spatial attributes
show-method Miscellaneous SpatialExperiment methods
show-method Miscellaneous SpatialImage methods
spatialCoords Methods for spatial attributes
spatialCoords-method Methods for spatial attributes
spatialCoords<- Methods for spatial attributes
spatialCoords<--method Methods for spatial attributes
spatialCoordsNames Methods for spatial attributes
spatialCoordsNames-method Methods for spatial attributes
spatialCoordsNames<- Methods for spatial attributes
spatialCoordsNames<--method Methods for spatial attributes
spatialData Methods for spatial attributes
spatialData-method Methods for spatial attributes
spatialData<- Methods for spatial attributes
spatialData<--method Methods for spatial attributes
spatialDataNames Methods for spatial attributes
spatialDataNames-method Methods for spatial attributes
spatialDataNames<- Methods for spatial attributes
spatialDataNames<--method Methods for spatial attributes
SpatialExperiment The SpatialExperiment class
SpatialExperiment-assays Methods for named assays
SpatialExperiment-class The SpatialExperiment class
SpatialExperiment-colData SpatialExperiment colData
SpatialExperiment-combine Combining SpatialExperiment objects
SpatialExperiment-methods Methods for spatial attributes
SpatialExperiment-misc Miscellaneous SpatialExperiment methods
SpatialExperiment-subset Subsetting SpatialExperiment objects
SpatialImage The SpatialImage class
SpatialImage-class The SpatialImage class
SpatialImage-misc Miscellaneous SpatialImage methods
StoredSpatialImage-class The SpatialImage class
[-method Subsetting SpatialExperiment objects