"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"

Documentation for package ‘SBGNview’ version 1.6.0

+.SBGNview	Generic function to modify SBGN graph features
arc-class	An object to store arc information
changeDataId	Change the data IDs of input omics data matrix
changeIds	Change vector of input IDs to another ID type
downloadSbgnFile	Download pre-generated SBGN-ML file from GitHub
findPathways	Retrieve pathways by keywords
glyph-class	An object to store glyph information
highlightArcs	Highlight arcs by arc class
highlightNodes	Highlight input nodes
highlightPath	Highlight shortest path between two nodes
loadMappingTable	Generate ID mapping table from input and output ID types
mapped.ids	IDs mappable by SBGNview
outputFile	Retrieve output file information from a SBGNview object
outputFile<-	Set or change output file information for a SBGNview object
pathways.info	Information of collected pathways
pathways.stats	Number of pathways collected
print.SBGNview	Generate image files
renderSbgn	Overlay omics data on a SBGN pathway graph and output image files.
sbgn.gsets	Retrieve gene list or compound list from collected databases
SBGNhub.id.mapping.tables	Mapping tables available in SBGNhub
sbgnNodes	Extract glyph information
SBGNview	Overlay omics data on SBGN pathway diagram and output image files.
spline.arc-class	An object to store information of spline arcs