Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

Documentation for package ‘MSstatsSampleSize’ version 1.6.0

classification_results	Example of output from designSampleSizeClassification function
designSampleSizeClassification	Estimate the mean predictive accuracy and mean protein importance over all the simulated datasets
designSampleSizeClassificationPlots	Visualization for sample size calculation in classification
designSampleSizeHypothesisTestingPlot	Sample size calculation plot for hypothesis testing
designSampleSizePCAplot	PCA plot for each simulation
estimateVar	Estimate the mean abundance and variance of each protein in each condition.
meanSDplot	Mean-SD plot
MSstatsSampleSize	MSstatsSampleSize: A package for optimal design of high-dimensional MS-based proteomics experiment
OV_SRM_train	The training set from a study for subjects with ovarian cancer
OV_SRM_train_annotation	Annotation file for 'OV_SRM_train',
simulateDataset	Simulate datasets with the given number of biological replicates and proteins based on the input _data_
simulated_datasets	Example of output from simulateDataset function
variance_estimation	Example of output from estimateVar function