FlowRepository R Interface


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Documentation for package ‘FlowRepositoryR’ version 1.23.0

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FlowRepositoryR-package Programming interface to access FlowRepository.org
attachmentProxy 'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository
attachmentProxy-class 'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository
attachments 'flowRepData': a class for storing metadata about a FlowRepository dataset
attachments-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
attachments<- 'flowRepData': a class for storing metadata about a FlowRepository dataset
attachments<--method 'flowRepData': a class for storing metadata about a FlowRepository dataset
download Download dataset files
download-method 'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository
download-method Download dataset files
download-method 'fcsProxy': a class representing a proxy to an FCS file in FlowRepository
download-method 'fileProxy': a class representing a proxy to a file in FlowRepository
download-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
fcs.files 'flowRepData': a class for storing metadata about a FlowRepository dataset
fcs.files-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
fcs.files<- 'flowRepData': a class for storing metadata about a FlowRepository dataset
fcs.files<--method 'flowRepData': a class for storing metadata about a FlowRepository dataset
fcsProxy 'fcsProxy': a class representing a proxy to an FCS file in FlowRepository
fcsProxy-class 'fcsProxy': a class representing a proxy to an FCS file in FlowRepository
fileProxy 'fileProxy': a class representing a proxy to a file in FlowRepository
fileProxy-class 'fileProxy': a class representing a proxy to a file in FlowRepository
flowRep.get Retrieve information about a specified FlowRepository dataset.
flowRep.ls List identifiers of datasets available in FlowRepository
flowRep.search Search FlowRepository for datasets matching the query and retrieve a vector of identifiers of matching datasets.
flowRep.submitGeneStatus Submit information about an IMPC gene analysis results to FlowRepository.
flowRep.submitImpcResults Submit IMPC data analysis results to FlowRepository.
flowRepData 'flowRepData': a class for storing metadata about a FlowRepository dataset
flowRepData-class 'flowRepData': a class for storing metadata about a FlowRepository dataset
flowRepOrganization 'flowRepOrganization': a class for storing details about an organization associated with a FlowRepository dataset
flowRepOrganization-class 'flowRepOrganization': a class for storing details about an organization associated with a FlowRepository dataset
FlowRepositoryR Programming interface to access FlowRepository.org
forgetFlowRepositoryCredentials Forgets credentials (email and password) to login to FlowRepository.
getFlowRepositoryURL Get FlowRepository URL addresss.
id Retrieve the identifier of flowRepData objects
id-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
id-method Retrieve the identifier of flowRepData objects
ilarCodeDescription Get the name of a lab from it's ILAR code
impc.experiments 'flowRepData': a class for storing metadata about a FlowRepository dataset
impc.experiments-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
impc.experiments<- 'flowRepData': a class for storing metadata about a FlowRepository dataset
impc.experiments<--method 'flowRepData': a class for storing metadata about a FlowRepository dataset
impcCodeDescription Get a human readable description of an IMPC code.
impcResultsCopy Retrieve a copy of IMPC results associated with a flowRepData object
impcResultsCopy-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
impcResultsCopy-method Retrieve a copy of IMPC results associated with a flowRepData object
is.downloaded Check if a dataset or a file proxy is downloaded
is.downloaded-method 'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository
is.downloaded-method 'fcsProxy': a class representing a proxy to an FCS file in FlowRepository
is.downloaded-method 'fileProxy': a class representing a proxy to a file in FlowRepository
is.downloaded-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
is.downloaded-method Check if a dataset or a file proxy is downloaded
listKnownIlarCodes List all known ILAR codes.
localpath 'fileProxy': a class representing a proxy to a file in FlowRepository
localpath-method 'fileProxy': a class representing a proxy to a file in FlowRepository
organizations 'flowRepData': a class for storing metadata about a FlowRepository dataset
organizations-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
setFlowRepositoryCredentials Set credentials (email and password) to login to FlowRepository.
setFlowRepositoryURL Set FlowRepository URL addresss.
summary-method 'attachmentProxy': a class representing a proxy to an attachment file in FlowRepository
summary-method 'fcsProxy': a class representing a proxy to an FCS file in FlowRepository
summary-method 'fileProxy': a class representing a proxy to a file in FlowRepository
summary-method 'flowRepData': a class for storing metadata about a FlowRepository dataset
summary-method 'flowRepOrganization': a class for storing details about an organization associated with a FlowRepository dataset